assignmentData {OTUbase} | R Documentation |
These accessors access and replace the assignmentData slot of OTUbase objects. assignmentData
is an AnnotatedDataFrame. assignmentData
and assignmentData<-
access and replace this AnnotatedDataFrame. assignmentLabels
and assignmentLabels<-
access and replace the labels of this AnnotatedDataFrame. aData
and aData<-
access and replace the dataframe component of the AnnotatedDataFrame.
assignmentNames
returns the assignment names present in the assignmentData
slot.
aData(object,...) aData(object)<-value assignmentData(object,...) assignmentData(object)<-value assignmentLabels(object,...) assignmentLabels(object)<-value assignmentNames(object,...)
object |
An OTUset or a TAXset object |
value |
The replacement value for |
... |
Added for completeness. Enables the passing of arguments. |
aData
returns a dataframe.
assignmentData
returns an AnnotatedDataFrame.
assignmentLabels
returns a character.
assignmentNames
returns a character.
## locate directory with data dirPath <- system.file("extdata/Sogin_2006", package="OTUbase") ## read in data into OTUset object soginOTU <- readOTUset(dirPath=dirPath, level="0.03", samplefile="sogin.groups", fastafile="sogin.fasta", otufile="sogin.unique.filter.fn.list", sampleADF="sample_metadata.txt") ## get the aData dataframe aData(soginOTU) ## get the assignmentData slot assignmentData(soginOTU)