QualityScaledModStringSet {Modstrings} | R Documentation |
title
QualityScaledModDNAStringSet(x, quality) QualityScaledModRNAStringSet(x, quality) readQualityScaledModDNAStringSet( filepath, quality.scoring = c("phred", "solexa", "illumina"), nrec = -1L, skip = 0L, seek.first.rec = FALSE, use.names = TRUE ) readQualityScaledModRNAStringSet( filepath, quality.scoring = c("phred", "solexa", "illumina"), nrec = -1L, skip = 0L, seek.first.rec = FALSE, use.names = TRUE ) writeQualityScaledModStringSet( x, filepath, append = FALSE, compress = FALSE, compression_level = NA )
x |
For the For |
quality |
A
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filepath, nrec, skip, seek.first.rec, use.names, append, compress, compression_level |
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quality.scoring |
Specify the quality scoring used in the FASTQ file.
Must be one of "phred" (the default), "solexa", or "illumina". If set to "
phred" (or "solexa" or "illumina"), the qualities will be stored in a
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a QualityScaledModDNAStringSet
or
QualityScaledModDNAStringSet
object