TCGA_Process_EstimateMissingValues {MethylMix}R Documentation

The TCGA_Process_EstimateMissingValues function

Description

Internal. Removes patients and genes with more missing values than the MissingValueThreshold, and imputes remaining missing values using Tibshirani's KNN method.

Usage

TCGA_Process_EstimateMissingValues(MET_Data, MissingValueThreshold = 0.2)

Arguments

MET_Data

data matrix.

MissingValueThreshold

threshold for removing samples and genes with too many missing values.

Value

the data set with imputed values and possibly some genes or samples deleted.


[Package MethylMix version 2.18.0 Index]