evalLogLikPiZINB_ManyCells_comp {LineagePulse} | R Documentation |
Refer to evalLogLikPiZINB_ManyCells.
evalLogLikPiZINB_ManyCells_comp(vecTheta, matCounts, lsMuModel, lsDispModel, lsDropModel)
vecTheta |
(numeric vector length linear model) Parameter estimates for logit linear model for drop-out rate. |
matCounts |
(count matrix genes x cells) Observed read counts, not observed are NA. |
lsMuModel |
(list) Object containing description of gene-wise mean parameter models. |
lsDispModel |
(list) Object containing description of gene-wise dispersion parameter models. |
lsDropModel |
(list) Object containing description of cell-wise drop-out parameter models. |
scaLogLik (scalar) Value of cost function: zero-inflated negative binomial likelihood.
David Sebastian Fischer
Compiled version of evalLogLikPiZINB_ManyCells