getAlleles {IMPCdata}R Documentation

Method "getAlleles"

Description

Returns alleles (MGI IDs or temporary IDs if the MGI ID is not assigned yet) that are processed for a specified combination of parameter, procedure, pipeline and phenotyping center. Temporary allele ID starts with "NULL".

Usage

    getAlleles(PhenCenterName=NULL,PipelineID=NULL,ProcedureID=NULL,
    ParameterID=NULL,StrainID=NULL)

Arguments

PhenCenterName

IMPC phenotyping center; mandatory argument

PipelineID

IMPC pipeline ID; mandatory argument

ProcedureID

IMPC procedure ID; mandatory argument

ParameterID

IMPC parameter ID; mandatory argument

StrainID

IMPC strain ID; optional argument

Value

Returns the list of IMPC alleles (IDS of alleles) that are processed measuring specified parameter within the procedure in the pipeline run by phenotyping center.

Author(s)

Natalja Kurbatova, Jeremy Mason

Examples

    listAlleles  <- getAlleles("RBRC","IMPC_001","IMPC_GRS_001","IMPC_GRS_003_001")
    for (alleleIndex in 1:min(length(listAlleles), 5)) {
        print(paste(listAlleles[alleleIndex],"-",
                        getName("allele_accession_id","allele_symbol",
                        listAlleles[alleleIndex])))
    }

[Package IMPCdata version 1.24.0 Index]