pmBarplot {HiLDA} | R Documentation |
Plot both mutation signatures and their mutational exposures from pmsignature output
pmBarplot(inputG, inputParam, sigOrder = NULL, refGroup = NULL, sortSampleNum = TRUE, refName = "Control", altName = "Case", charSize = 3)
inputG |
a MutationFeatureData S4 class output by the pmsignature. |
inputParam |
a estimatedParameters S4 class output by the pmsignature. |
sigOrder |
the order of signatures if needed (default: NULL). |
refGroup |
the samples in the reference group (default: NULL). |
sortSampleNum |
whether to sort by number of mutations (default: TRUE). |
refName |
the name of reference group (default: Control). |
altName |
the name of the other group (default: Case). |
charSize |
the size of the character on the signature plot (default: 3). |
a list of a signature plot and a barplot of mutational exposures
load(system.file("extdata/sample.rdata", package="HiLDA")) Param <- pmgetSignature(G, K = 3) pmPlots <- pmBarplot(G, Param, refGroup=1:4) cowplot::plot_grid(pmPlots$sigPlot, pmPlots$propPlot, rel_widths = c(1,3))