hildaDiffPlot {HiLDA} | R Documentation |
Read the raw mutation data with the mutation feature vector format, estimate and plot both mutation signatures and their fractions
hildaDiffPlot(inputG, hildaResult, sigOrder = NULL, charSize = 3)
inputG |
a MutationFeatureData S4 class output by the pmsignature. |
hildaResult |
a rjags class output by HiLDA. |
sigOrder |
the order of signatures if needed (default: NULL). |
charSize |
the size of the character on the signature plot (default: 3) |
a list of the signature plot and the mean difference plot.
load(system.file("extdata/sample.rdata", package="HiLDA")) inputFile <- system.file("extdata/hildaLocal.rdata", package="HiLDA") hildaLocal <- readRDS(inputFile) hildaDiffPlot(G, hildaLocal)