readWhippetDIFFfiles {GeneStructureTools} | R Documentation |
Read in a list of whippet .diff.gz files and format as a data.frame
readWhippetDIFFfiles(files)
files |
vector of *.diff.gz file names |
data.frame with junction counts for all files
Beth Signal
Other whippet data processing: coordinates
,
diffSplicingResults
,
filterWhippetEvents
,
formatWhippetEvents
,
junctions
, readCounts
,
readWhippetDataSet
,
readWhippetJNCfiles
,
readWhippetPSIfiles
,
whippetTranscriptChangeSummary
whippetFiles <- list.files(system.file("extdata","whippet/", package = "GeneStructureTools"), full.names = TRUE) diffFiles <- whippetFiles[grep(".diff", whippetFiles)] whippetDiffSplice <- readWhippetDIFFfiles(diffFiles)