readWhippetJNCfiles {GeneStructureTools} | R Documentation |
Read in a list of whippet .jnc.gz files and format as a GRanges object
readWhippetJNCfiles(files)
files |
vector of *.jnc.gz file names |
GRanges object with junctions
Beth Signal
Other whippet data processing: coordinates
,
diffSplicingResults
,
filterWhippetEvents
,
formatWhippetEvents
,
junctions
, readCounts
,
readWhippetDIFFfiles
,
readWhippetDataSet
,
readWhippetPSIfiles
,
whippetTranscriptChangeSummary
whippetFiles <- list.files(system.file("extdata","whippet/", package = "GeneStructureTools"), full.names = TRUE) jncFiles <- whippetFiles[grep(".jnc", whippetFiles)] whippetJNC <- readWhippetJNCfiles(jncFiles)