Stat.nonpara.permu {ELMER}R Documentation

Stat.nonpara.permu

Description

Stat.nonpara.permu

Usage

Stat.nonpara.permu(
  Probe,
  Gene,
  Top = 0.2,
  correlation = "negative",
  unmethy = NULL,
  methy = NULL,
  Meths = Meths,
  Exps = Exps
)

Arguments

Probe

A character of name of Probe in array.

Gene

A vector of gene ID.

Top

A number determines the percentage of top methylated/unmethylated samples. Only used if unmethy and methy are not set.

correlation

Type of correlation to evaluate (negative or positive). Negative (default) checks if hypomethylated region has a upregulated target gene. Positive checks if region hypermethylated has a upregulated target gene.

unmethy

Index of U (unmethylated) group.

methy

Index of M (methylated) group.

Meths

A matrix contains methylation for each probe (row) and each sample (column).

Exps

A matrix contains Expression for each gene (row) and each sample (column).

Value

U test results


[Package ELMER version 2.12.0 Index]