getTFBindingSites {ELMER} | R Documentation |
Saves a bed file with the unmethylated probes (+-250bp) regions that was infered to be bound by a given TF
getTFBindingSites( tf = NULL, results.dir = NULL, genome = "hg38", met.platform = "450K" )
tf |
TF name |
results.dir |
path to the directory with the results (i.e. analysis/unsupervised/definition-Primary.solid.Tumor_vs_Solid.Tissue.Normal/hypo/) |
genome |
Human genome (hg38, hg19) |
met.platform |
DNA Methylation Array platform (EPIC, 450K) |
## Not run: getTFBindingSites("HNF1A", results.dir = "analysis/unsupervised/group-Tumor_vs_Normal/hypo/") ## End(Not run)