QuantileNorm {EBSeq} | R Documentation |
'QuantileNorm' gives the quantile normalization.
QuantileNorm(Data, Quantile)
Data |
The data matrix with transcripts in rows and lanes in columns. |
Quantile |
The quantile the user wishs to use. Should be a number between 0 and 1. |
Use a quantile point to normalize the data.
The function will return a vector contains the normalization factor for each lane.
Ning Leng
Bullard, James H., et al. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC bioinformatics 11.1 (2010): 94.
MedianNorm
data(GeneMat) Sizes = QuantileNorm(GeneMat,.75) #EBOut = EBTest(Data = GeneMat, # Conditions = as.factor(rep(c("C1","C2"), each=5)), # sizeFactors = Sizes, maxround = 5)