degObj {DEGreport}R Documentation

Create a deg object that can be used to plot expression values at shiny server:runGist(9930881)

Description

Create a deg object that can be used to plot expression values at shiny server:runGist(9930881)

Usage

degObj(counts, design, outfile)

Arguments

counts

Output from get_rank function.

design

Colour used for each gene.

outfile

File that will contain the object.

Value

R object to be load into vizExp.

Examples

data(humanGender)
library(SummarizedExperiment)
degObj(assays(humanGender)[[1]], colData(humanGender), NULL)

[Package DEGreport version 1.24.1 Index]