degQC {DEGreport} | R Documentation |
This function joins the output of degMean
,
degVar
and degMV
in a
single plot. See these functions for further information.
degQC(counts, groups, object = NULL, pvalue = NULL)
counts |
Matrix with counts for each samples and each gene. |
groups |
Character vector with group name for each sample in the same order than counts column names. |
object |
DEGSet oobject. |
pvalue |
pvalues of DEG analysis. |
ggplot2 object
data(humanGender) library(DESeq2) idx <- c(1:10, 75:85) dds <- DESeqDataSetFromMatrix(assays(humanGender)[[1]][1:1000, idx], colData(humanGender)[idx,], design=~group) dds <- DESeq(dds) res <- results(dds) degQC(counts(dds, normalized=TRUE), colData(dds)[["group"]], pvalue = res[["pvalue"]])