ckaks-class {CorMut} | R Documentation |
ckaks class for representing the ckaksCodon/ckaksAA results
ckaks
:Object of class "matrix"
. Conditional kaks among codons or amino mutations
lod
:Object of class "matrix"
. LOD confidence score indicates the significance of correlated mutations
signature(object = "ckaks")
: Filter positive selection amino mutations for objects of ckaks class.
signature(object = "ckaks")
: Plot the influence network among mutations for objects of ckaks class.
filterSites
,ckaksCodon
,ckaksAA
,plot.ckaks
#examplefile=system.file("extdata","PI_treatment.aln",package="CorMut") #example=seqFormat(examplefile) #result=ckaksAA(example)