kaksCodon-class {CorMut} | R Documentation |
kaksCodon class for representing the kaksCodon results
seq_num
:Object of class "list"
. The number of sequences
kaks
:Object of class "numeric"
. kaks value
lod
:Object of class "numeric"
. LOD confidence score, refer to vignette for details
q
:Object of class "numeric"
. q value, refer to vignette for details
ka
:Object of class "numeric"
.ka value of kaks ratio, i.e. the samples count of the nonsynonymous mutation.
ks
:Object of class "numeric"
. ks value of kaks ratio, i.e. the samples count of the synonymous mutation.
signature(object = "kaksCodon")
: Filter positive selection sites for objects of kaksCodon class.
#examplefile=system.file("extdata","PI_treatment.aln",package="CorMut") #example=seqFormat(examplefile) #result=kaksCodon(example)