plot {CorMut} | R Documentation |
Plot implement plot methods for ckaksCodon,ckaksAA,miCodon, miAA and biCompare objects respectively. Plot visualize the mutation correlation among sites or amino mutations.
Plot the results of ckaks object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts
Plot the results of MI object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts
Plot the results of JI object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts
Plot the results of biCompare object. The paramater "layout_reset" was provided to set the layout of the network. You can refer to "layout_ function" in igraph package to get the graph layouts
Zhenpeng Li
ckaksCodon
,ckaksAA
,miCodon
,miAA
,jiAA
examplefile=system.file("extdata","PI_treatment.aln",package="CorMut") example=seqFormat(examplefile) result=ckaksAA(example) plot(result)