ODToFluxBounds {CoRegFlux}R Documentation

ODToFluxBounds

Description

ODToFluxBounds

Usage

ODToFluxBounds(odRate, model, metabolites_rates = NULL,
  biomass_flux_index = get_biomass_flux_position(model))

Arguments

odRate

The values of OD measured over time

model

An object of class modelOrg, the metabolic model.

metabolites_rates

A data.frame containing the extraneous metabolites, their initial concentrations and their uptake rates. Columns must be named "names","concentrations" and "rates".

biomass_flux_index

Optional. index of the flux corresponding to the biomass reaction.

Value

Flux bounds from OD


[Package CoRegFlux version 1.4.0 Index]