get_metabolites_exchange_fluxes {CoRegFlux} | R Documentation |
Get metabolites exchange fluxes
get_metabolites_exchange_fluxes(model, metabolites, exchange_met = build_exchange_met(model), backward_fluxes = "_b", forward_fluxes = "_f")
model |
An object of class modelOrg, the genome scale metabolic model |
metabolites |
A data.frame containing the names and concentrations of metabolites |
exchange_met |
A data.frame as build by the function build_exchange_met |
backward_fluxes |
Optional parameter for irreversible model to indicate backward fluxes |
forward_fluxes |
Optional parameter for irreversible model to indicate forward fluxes |
a data.frame containing the exchange metabolite model id and the equivalent name
data("iMM904") metabolites<-data.frame("name"=c("D-Glucose","Glycerol"), "concentrations"=c(16,0)) get_metabolites_exchange_fluxes(iMM904,metabolites)