discreteNorm {CNAnorm} | R Documentation |
discreteNorm
performs normalization of data using information on ploidy.
Implicitly calls "validation"
if no validation was performed
## S4 method for signature 'CNAnorm' discreteNorm(object, normBy = object)
object |
An object of Class |
normBy |
An object of Class |
An object of class "CNAnorm"
Stefano Berri s.berri@leeds.ac.uk and Arief Gusnanto a.gusnanto@leeds.ac.uk
Gusnanto, A., Wood, H.M., Pawitan, Y., Rabbitts, P. and Berri, S. (2011) Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next generation sequence data. Bioinformatics
data(CN) # see peakPloidy documentation to know how object CN is created CN <- discreteNorm(CN)