summariseChrExpr {CAGEr} | R Documentation |
Counts the number of molecules detected per chromosome, normalises
by library size and stores the raw and normalised results in the
CAGEr
object.
summariseChrExpr(object) ## S4 method for signature 'CAGEexp' summariseChrExpr(object)
object |
A |
Modifies the CAGEexp
by adding a “seqNameTotals” experiment
containing matrices where rows represent chromosomes and columns represent samples.
Charles Plessy
seqNameTotals
Other CAGEr object modifiers: CTSStoGenes
,
CustomConsensusClusters
,
aggregateTagClusters
,
annotateCTSS
, clusterCTSS
,
cumulativeCTSSdistribution
,
getCTSS
, normalizeTagCount
,
quantilePositions
summariseChrExpr(exampleCAGEexp)