plotFootprints {ATACseqQC} | R Documentation |
Visualizing the footprint profile
plotFootprints( Profile, Mlen = 0, xlab = "Dist. to motif (bp)", ylab = "Cut-site probability", legLabels = c("For. strand", "Rev. strand"), legTitle, xlim, ylim, newpage = TRUE, motif, segmentation )
Profile |
A vector with the profile estimated by CENTIPEDE |
Mlen |
Length of the motif for drawing vertical lines delimiting it |
xlab |
Label of the x axis |
ylab |
Label for the y axis |
legLabels |
Labels for legend. |
legTitle |
Title for one of the plot corners |
xlim |
xlim |
ylim |
ylim |
newpage |
Plot the figure in a new page? |
motif |
a pfm object. |
segmentation |
the segmentation position and abundance |
Null.
Jianhong Ou
library(MotifDb) CTCF <- query(MotifDb, c("CTCF")) CTCF <- as.list(CTCF) motif <- new("pfm", mat=CTCF[[1]], name="CTCF") ATACseqQC:::plotFootprints(Profile=sample.int(500), Mlen=ncol(CTCF[[1]]), motif=motif)