merge_GR {ALPS} | R Documentation |
merge overlaping genomic regions from multiple peak/bed files
merge_GR(x)
x |
a character vector of bed file paths |
GRanges object
## load example data chr21_data_table <- system.file('extdata/bw', 'ALPS_example_datatable.txt', package = 'ALPS', mustWork = TRUE) ## attach path to bw_path and bed_path d_path <- dirname(chr21_data_table) chr21_data_table <- read.delim(chr21_data_table, header = TRUE) chr21_data_table$bw_path <- paste0(d_path, '/', chr21_data_table$bw_path) chr21_data_table$bed_path <- paste0(d_path, '/', chr21_data_table$bed_path) x <- as.character(chr21_data_table$bed_path) merge_GR(x = x)