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| areAllNonnegativeIntegers | Helper function to check if all values in the input count matrix are either NA, NaN, or non-negative integers |
| checkAutomaticCountsEstimatesArguments | Helper function to check the arguments input to getAutomaticCountsEstimates |
| checkManualCountsEstimatesArguments | Helper function to check the arguments input to getManualCountsEstimates |
| convertFishalyserCsvToCountMatrix | Function to convert CSV output of the FISHalyseR automatic FISH splot counting software to a count matrix suitable for input to frenchFISH's getAutomaticCountsEstimates |
| generatePPdat | Helper function to convert spot counts and nuclear area measurements into continuous events for Poisson point estimation |
| getAutomaticCountsEstimates | FrenchFISH function for generating Poisson point estimates of spot counts from spot counts which have been automatically generated. |
| getAverageVolumeFrac | Helper function to get the average volume of nucleus sampled given the nucleus radius and section height |
| getManualCountsEstimates | FrenchFISH function for generating volume adjusted spot counts from spots which have been manually counted (uses a Markov chain Monte Carlo method). |
| getMaxVolumeFrac | Helper function to get the maximum possible volume of nucleus sampled given the nucleus radius and section height |
| getMinVolumeFrac | Helper function that returns the minimum possible volume of nucleus sampled given the nucleus radius and section height |
| getVsegFrac | Helper function that returns the fraction of the nucleus sampled for a specified distance from the midpoint |