Spatial Transcriptomics Analysis


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Documentation for package ‘Spaniel’ version 1.2.0

Help Pages

createSCE Create a SingleCellExperiment Object From Spatial Transcriptomics Data
createSeurat Create a Seurat Object From Spatial Transcriptomics Data
markClusterCol markClusterCol
parseImage This function parses a HE image to use as the background for plots
removeSpots removeSpots
runShinySpaniel RunShinySpaniel
selectSpots selectSpots
spanielPlot Spatial Transcriptomics Plot