furrowSeg

DOI: 10.18129/B9.bioc.furrowSeg    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see furrowSeg.

Furrow Segmentation

Bioconductor version: 3.10

Image feature data and analysis codes for the Guglielmi, Barry et al. paper describing the application of an optogenetics tools to disrupt Drosophila embryo furrowing.

Author: Joseph Barry

Maintainer: Joseph Barry <joseph.barry at embl.de>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("furrowSeg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("furrowSeg")

 

PDF	R Script	Supplementary Methods - Automatic generation of paper figures
PDF	R Script	Supplementary Methods - Example furrow segmentation
PDF		Reference Manual

Details

biocViews	Drosophila_melanogaster_Data, ExperimentData, ReproducibleResearch, Tissue
Version	1.14.0
License	Artistic-2.0
Depends	R (>= 3.3), EBImage
Imports	abind, dplyr, locfit, tiff
LinkingTo
Suggests	BiocStyle, ggplot2, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	furrowSeg_1.14.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/furrowSeg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/furrowSeg
Package Short Url	https://bioconductor.org/packages/furrowSeg/
Package Downloads Report	Download Stats