TENxBUSData

DOI: 10.18129/B9.bioc.TENxBUSData    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see TENxBUSData.

Single cell dataset from 10x in BUS format

Bioconductor version: 3.10

Download Barcode, UMI, and Set (BUS) format of 10x datasets from within R. This package accompanies the package BUSpaRse, which can load BUS format into R as a sparse matrix, and which has utility functions related to using the C++ command line package bustools.

Author: Lambda Moses [aut, cre]

Maintainer: Lambda Moses <dlu2 at caltech.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxBUSData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TENxBUSData")

 

HTML	R Script	Downloading BUS data
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, ExpressionData, SequencingData, SingleCellData
Version	1.0.0
License	BSD_2_clause + file LICENSE
Depends
Imports	ExperimentHub, AnnotationHub, utils, BiocGenerics
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/BUStools/TENxBUSData
BugReports	https://github.com/BUStools/TENxBUSData/issues
Depends On Me
Imports Me
Suggests Me	BUSpaRse
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TENxBUSData_1.0.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/TENxBUSData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TENxBUSData
Package Short Url	https://bioconductor.org/packages/TENxBUSData/
Package Downloads Report	Download Stats