switchBox

DOI: 10.18129/B9.bioc.switchBox    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see switchBox.

Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm

Bioconductor version: 3.10

The package offer different classifiers based on comparisons of pair of features (TSP), using various decision rules (e.g., majority wins principle).

Author: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Maintainer: Bahman Afsari <bahman at jhu.edu>, Luigi Marchionni <marchion at jhu.edu>, Wikum Dinalankara <wdinala1 at jhmi.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("switchBox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("switchBox")

 

PDF	R Script	Working with the switchBox package
PDF		Reference Manual

Details

biocViews	Classification, Software, StatisticalMethod
Version	1.22.0
In Bioconductor since	BioC 3.0 (R-3.1) (5.5 years)
License	GPL-2
Depends	R (>= 2.13.1), pROC, gplots
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	switchBox_1.22.0.tar.gz
Windows Binary	switchBox_1.22.0.zip
Mac OS X 10.11 (El Capitan)	switchBox_1.22.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/switchBox
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/switchBox
Package Short Url	https://bioconductor.org/packages/switchBox/
Package Downloads Report	Download Stats