adaptest

DOI: 10.18129/B9.bioc.adaptest    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see adaptest.

Data-Adaptive Statistics for High-Dimensional Multiple Testing

Bioconductor version: 3.10

Data-adaptive test statistics represent a general methodology for performing multiple hypothesis testing on effects sizes while maintaining honest statistical inference when operating in high-dimensional settings (). The utilities provided here extend the use of this general methodology to many common data analytic challenges that arise in modern computational and genomic biology.

Author: Weixin Cai [aut, cre, cph] , Nima Hejazi [aut] , Alan Hubbard [ctb, ths]

Maintainer: Weixin Cai <wcai at berkeley.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("adaptest")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adaptest")

 

HTML	R Script	Data-Mining Biomarkers and High-Dimensional Testing
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, DimensionReduction, GeneExpression, Genetics, Microarray, MultipleComparison, Regression, Sequencing, Software
Version	1.6.1
In Bioconductor since	BioC 3.7 (R-3.5) (2 years)
License	GPL-2
Depends	R (>= 3.6.0)
Imports	methods, graphics, stats, utils, calibrate, origami (>= 1.0.0), SummarizedExperiment, S4Vectors, tmle
LinkingTo
Suggests	Matrix, testthat, rmarkdown, knitr, BiocStyle, SuperLearner, earth, gam, nnls, airway
SystemRequirements
Enhances
URL	https://github.com/wilsoncai1992/adaptest
BugReports	https://github.com/wilsoncai1992/adaptest/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	adaptest_1.6.1.tar.gz
Windows Binary	adaptest_1.6.1.zip
Mac OS X 10.11 (El Capitan)	adaptest_1.6.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/adaptest
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/adaptest
Package Short Url	https://bioconductor.org/packages/adaptest/
Package Downloads Report	Download Stats