RImmPort

DOI: 10.18129/B9.bioc.RImmPort    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see RImmPort.

RImmPort: Enabling Ready-for-analysis Immunology Research Data

Bioconductor version: 3.10

The RImmPort package simplifies access to ImmPort data for analysis in the R environment. It provides a standards-based interface to the ImmPort study data that is in a proprietary format.

Author: Ravi Shankar <rshankar at stanford.edu>

Maintainer: Zicheng Hu <Zicheng.Hu at ucsf.edu>, Ravi Shankar <rshankar at stanford.edu>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RImmPort")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RImmPort")

 

PDF	R Script	RImmPort: Enabling ready-for-analysis immunology research data
PDF	R Script	RImmPort: Quick Start Guide
PDF		Reference Manual

Details

biocViews	BiomedicalInformatics, DataImport, DataRepresentation, Software
Version	1.14.0
In Bioconductor since	BioC 3.3 (R-3.3) (4 years)
License	GPL-3
Depends
Imports	plyr, dplyr, DBI, data.table, reshape2, methods, sqldf, tools, utils, RSQLite
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL	http://bioconductor.org/packages/RImmPort/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RImmPort_1.14.0.tar.gz
Windows Binary	RImmPort_1.14.0.zip (64-bit only)
Mac OS X 10.11 (El Capitan)	RImmPort_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RImmPort
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RImmPort
Package Short Url	https://bioconductor.org/packages/RImmPort/
Package Downloads Report	Download Stats