checkTissuesToMerge {yarn} | R Documentation |
Check tissues to merge based on gene expression profile
checkTissuesToMerge(obj, majorGroups, minorGroups, filterFun = NULL, plotFlag = TRUE, ...)
obj |
ExpressionSet object. |
majorGroups |
Column name in the phenoData slot that describes the general body region or site of the sample. |
minorGroups |
Column name in the phenoData slot that describes the specific body region or site of the sample. |
filterFun |
Filter group specific genes that might disrupt PCoA analysis. |
plotFlag |
TRUE/FALSE whether to plot or not |
... |
Parameters that can go to |
CMDS Plots of the majorGroupss colored by the minorGroupss. Optional matrix of CMDS loadings for each comparison.
checkTissuesToMerge
data(skin) checkTissuesToMerge(skin,'SMTS','SMTSD')