getOutliers {yaqcaffy} | R Documentation |
This function retrives the outliers fot the different quality control metrics stored in a YAQCStatsObject. Outliers are defined as being outside of the mean +/- 2 stdev range or mean/2, mean*1.5 for the scale factor.
getOutliers(YAQCStatsObject,slot)
YAQCStatsObject |
an object of type |
slot |
an object of type |
The slot strings that can be used are:
"sfs"
"avbg"
"avns"
"pp"
"actin"
"gapdh"
"biob"
"bioc"
"biod"
"dap"
"thr"
"phe"
"lys"
An object of type "numeric"
giving the outliers names and values
Laurent Gatto
## load data library(MAQCsubsetAFX) data(refA) ## create the yaqc object qobj <- yaqc(refA[, 3:5]) ## get outliers for the scale factor getOutliers(qobj, "sfs")