plotSmoothers {tradeSeq} | R Documentation |
Plot the smoothers estimated by tradeSeq
.
plotSmoothers(models, ...) ## S4 method for signature 'gam' plotSmoothers(models, nPoints = 100, lwd = 2, size = 2/3, xlab = "Pseudotime", ylab = "Log(expression + 1)", border = TRUE, alpha = 1) ## S4 method for signature 'SingleCellExperiment' plotSmoothers(models, counts, gene, nPoints = 100, lwd = 2, size = 2/3, xlab = "Pseudotime", ylab = "Log(expression + 1)", border = TRUE, alpha = 1)
models |
Either the |
... |
parameters including: |
nPoints |
The number of points used to extraplolate the fit |
lwd |
Line width of the smoother. Passed to |
size |
Character expansion of the data points. Passed to |
xlab |
x-axis label. Passed to |
ylab |
y-axis label. Passed to |
border |
logical: should a white border be drawn around the mean smoother. |
alpha |
Numeric between 0 and 1, determines the transparancy of data points,
see |
counts |
The matrix of gene expression counts. |
gene |
Gene name of gene to plot. |
A ggplot
object
data(gamList, package = "tradeSeq") plotSmoothers(gamList[[4]])