patternTest {tradeSeq} | R Documentation |
Assess differences in expression patterns between lineages.
patternTest(models, ...) ## S4 method for signature 'list' patternTest(models, global = TRUE, pairwise = FALSE, nPoints = 100) ## S4 method for signature 'SingleCellExperiment' patternTest(models, global = TRUE, pairwise = FALSE, nPoints = 100)
models |
the list of GAMs, typically the output from
|
... |
parameters including: |
global |
If TRUE, test for all pairwise comparisons simultaneously. |
pairwise |
If TRUE, test for all pairwise comparisons independently. |
nPoints |
the number of points to be compared between lineages. |
A matrix with the wald statistic, the number of df and the p-value associated with each gene for all the tests performed. If the testing procedure was unsuccessful, the procedure will return NA test statistics and p-values.
data(gamList, package = "tradeSeq") patternTest(gamList, global = TRUE, pairwise = TRUE)