target {target}R Documentation

target: Predict Combined Function of Transcription Factors.

Description

Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) <doi: 10.1038/nprot.2013.150>. Extend the algorithm to predict the combined effect of two DNA-binding elements from comprable binding and expression data.

Details

Predicting associated peaks and direct targets

associated_peaks direct_targets

Plotting and testing predictions plot_predictions test_predictions

Internal target functions: merge_ranges find_distance score_peaks score_regions rank_product


[Package target version 1.0.0 Index]