plotNucFreq {seqTools} | R Documentation |
The function creates plots on position wise relative nucleotide content single FASTQ files.
plotNucFreq(object, i, main, maxx, ...)
object |
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i |
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main |
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maxx |
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... |
Other arguments which are passed to the internally called plot function. |
None.
Wolfgang Kaisers
Hansen KD, Brenner SE, Dudoit S. Biases in Illumina transcriptome sequencing caused by random hexamer priming. Nucleic Acids Research 2010 Vol.38 No.12 e131, doi: 10.1093/nar/gkq224
Fastqq-class
basedir <- system.file("extdata", package="seqTools") setwd(basedir) # fq <- fastqq(c("g4_l101_n100.fq.gz", "g5_l101_n100.fq.gz"), k=4, probeLabel=c("g4","g5")) # plotNucFreq(fq, 2) # Same plot without x-axis plotNucFreq(fq, 2, xaxt="n") # plotNucFreq(fq, 1, maxx=15)