createBiopaxnew {pwOmics}R Documentation

Create a new Biopax model containing all database information.

Description

This function creates a new biopax model depending on which pathway databases are chosen for analysis.

Usage

createBiopaxnew(intIDs, pwdatabases)

Arguments

intIDs

output list of genintIDs function.

pwdatabases

vector indicating with which pathway database the pathways should be determined; possible choices are "biocarta", "kegg", "nci", "reactome".

Value

biopax object generated from the specified pathway databases.


[Package pwOmics version 1.18.0 Index]