findxneighborsoverlap {pwOmics}R Documentation

Find overlap of next neighbors of transcription factors in identified pathways.

Description

Find the overlap of x next neighbors of transcription factors in identified pathways. Writes the overlap into a given list called 'regulators'.

Usage

findxneighborsoverlap(neighbors, noTFs_inPW, regul)

Arguments

neighbors

list of x next neighbors for each transcription factor in the pathway as provided by findxnextneighbors function.

noTFs_inPW

numeric value specifying number of TFs being at least part of the pathway.

regul

list element of regulators list for current pathway.

Value

list of regulators identified in x next neighbors of TFs.


[Package pwOmics version 1.18.0 Index]