parseSplicingEvent {psichomics}R Documentation

Parse alternative splicing event identifier

Description

Parse alternative splicing event identifier

Usage

parseSplicingEvent(
  event,
  char = FALSE,
  pretty = FALSE,
  extra = NULL,
  coords = FALSE
)

Arguments

event

Character: event identifier

char

Boolean: return character vector instead of list with parsed values?

pretty

Boolean: return a prettier name of the event identifier?

extra

Character: extra information to add (such as species and assembly version); only used if pretty = TRUE and char = TRUE

coords

Boolean: display extra coordinates regarding the alternative and constitutive regions of alternative splicing events? If char = FALSE, all coordinates are always displayed

Value

Parsed event

Examples

events <- c("SE_1_-_123_456_789_1024_TST",
            "MXE_3_+_473_578_686_736_834_937_HEY/YOU")
parseSplicingEvent(events)

[Package psichomics version 1.12.1 Index]