listSplicingAnnotations {psichomics}R Documentation

List alternative splicing annotations

Description

List alternative splicing annotations

Usage

listSplicingAnnotations(species = NULL, assembly = NULL, date = NULL)

Arguments

species

Character: filter results by species (regular expression)

assembly

Character: filter results by assembly (regular expression)

date

Character: filter results by date (regular expression)

Value

Named character vector with splicing annotation names

See Also

Other functions for PSI quantification: filterPSI(), getSplicingEventTypes(), loadAnnotation(), plotRowStats(), quantifySplicing()

Examples

listSplicingAnnotations() # Return all alternative splicing annotations
listSplicingAnnotations(assembly="hg19") # Search for hg19 annotation
listSplicingAnnotations(assembly="hg38") # Search for hg38 annotation
listSplicingAnnotations(date="201(7|8)") # Search for 2017 or 2018 annotation

[Package psichomics version 1.12.1 Index]