listSplicingAnnotations {psichomics} | R Documentation |
List alternative splicing annotations
listSplicingAnnotations(species = NULL, assembly = NULL, date = NULL)
species |
Character: filter results by species (regular expression) |
assembly |
Character: filter results by assembly (regular expression) |
date |
Character: filter results by date (regular expression) |
Named character vector with splicing annotation names
Other functions for PSI quantification:
filterPSI()
,
getSplicingEventTypes()
,
loadAnnotation()
,
plotRowStats()
,
quantifySplicing()
listSplicingAnnotations() # Return all alternative splicing annotations listSplicingAnnotations(assembly="hg19") # Search for hg19 annotation listSplicingAnnotations(assembly="hg38") # Search for hg38 annotation listSplicingAnnotations(date="201(7|8)") # Search for 2017 or 2018 annotation