genesInArea {phenoTest} | R Documentation |
Combine the output of getEsPositions and findCopyNumber to see which genes are in the enriched areas.
Given areas of enrichment (obtained with findCopyNumber
) and a
set of genes or probes and their positions in the genome (obtained with
getEsPositions
) the function tells which genes fall in each
area.
genesInArea(x, regions)
x |
An object of class |
regions |
This is usually the output of |
Evarist Planet
getEsPositions, findCopyNumber
data(epheno) phenoNames(epheno) mypos <- getEsPositions(epheno,'Relapse') head(mypos) #regions <- findCopyNumber(mypos) #head(regions) #genes <- genesInArea(mypos,regions) #head(genes)