sigPway {pathVar} | R Documentation |
A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.
sigPway(pvalue_results, pvalue)
pvalue_results |
|
pvalue |
the significance level to test. |
This function takes the output pathVarTwoSamples
or pathVarOneSample
and returns a significantPathway2
or significantPathway
object specifying
the significant pathway(s) and which gene(s) belongs to the significant pathway(s).
A significantPathway2
object or significantPathway object
is returned.
Laurence de Torrente, Samuel Zimmerman, Jessica Mar
results_2samples=pathVarTwoSamplesCont(bock,pways.kegg,groups=as.factor(c(rep(1,10),rep(2,10))),boot=1000,varStat="sd") sig_kegg=sigPway(results_2samples,0.05)