miRNA_PrecursorToMature {miRBaseConverter} | R Documentation |
This function converts the precursors to the corresponding mature miRNAs in the specified miRBase version.
miRNA_PrecursorToMature(miRNANames, version = NULL)
miRNANames |
A character vector representing the miRNA names. |
version |
The default is NULL representing the most possible latest version of the input miRNA Names will be checked automatically.
Otherwise, a character value representing the version corresponding the input miRNA Names.
Users can apply the function getAllVersionInfo() to get the available miRNA version names.
The optional values are in below: |
A data frame(nx3). The number of rows equal to the input miRNA names. The three columns are defined as below:
OriginalName : The input miRNA Names.
Mature1 : The corresponding mature miRNAs (always "-5p") .
Mature2 : The corresponding mature miRNAs (always "-3p") .
If the input miRNA Names mingle mature miRNA names, the mature miRNA names will match to themselves in the output.
Xu, Taosheng taosheng.x@gmail.com
miRNANames=c("pma-mir-100a","sko-mir-92a","hsa-mir-6131","mtr-MIR2655i", "mmu-mir-153","mtr-MIR2592am","mml-mir-1239","xtr-mir-128-2","oan-mir-100", "mmu-mir-378b","hsa-miR-508-5p","mmu-miR-434-3p") result=miRNA_PrecursorToMature(miRNANames)