load.bs.genome {metaseqR}R Documentation

Loads (or downloads) the required BSGenome package

Description

Retrieves the required BSgenome package when the annotation source is "ucsc" or "refseq". These packages are required in order to estimate the GC-content of the retrieved genes from UCSC or RefSeq.

Usage

    load.bs.genome(org)

Arguments

org

one of metaseqr supported organisms.

Value

A proper BSgenome package name.

Author(s)

Panagiotis Moulos

Examples


bs.obj <- load.bs.genome("mm9")


[Package metaseqR version 1.26.0 Index]