get.ucsc.tabledef {metaseqR} | R Documentation |
Creates a list of UCSC Genome Browser database tables and their SQLite definitions with the purpose of creating a temporary SQLite database to be used used with metaseqR. This functionality is used when the package RMySQL is not available for some reason, e.g. Windows machines.
get.ucsc.tabledef(org, type, refdb="ucsc", what="queries")
org |
one of metaseqR supported organisms. |
type |
either |
refdb |
one of |
what |
either |
A list with SQLite table definitions.
Panagiotis Moulos
db.tabledefs <- get.ucsc.tabledef("hg18","gene","ucsc")