make.matrix {metaseqR} | R Documentation |
Returns a list of matrices based on the export scales
that have been chosen from the main function and a subset
of samples based on the sample names provided in the
sample.list
argument of the main
metaseqr
function. Internal use.
make.matrix(samples, data.list, export.scale = "natural")
samples |
a set of samples from the dataset under
processing. They should match sample names from
|
data.list |
a list containing natural or transformed
data, typically an output
from |
export.scale |
the output transformations used as
input also to |
A named list whose names are the elements in
export.scale
. Each list member is the respective
sample subest data matrix.
Panagiotis Moulos
data.matrix <- round(1000*matrix(runif(400),100,4)) rownames(data.matrix) <- paste("gene_",1:100,sep="") colnames(data.matrix) <- c("C1","C2","T1","T2") tr <- make.transformation(data.matrix,c("log2","vst")) mm <- make.matrix(c("C1","T1"),tr,"log2") head(tr$vst)