get.weights {metaseqR}R Documentation

Get precalculated statistical test weights

Description

This function returns pre-calculated weights for human, chimpanzee, mouse, fruitfly and arabidopsis based on the performance of simulated datasets estimated from real data from the ReCount database (http://bowtie-bio.sourceforge.net/recount/). Currently pre-calculated weights are available only when all six statistical tests are used and for normalization with EDASeq. For other combinations, use the estimate.aufc.weights function.

Usage

    get.weights(org = c("human", "chimpanzee", "mouse",
        "fruitfly", "arabidopsis"))

Arguments

org

"human", "chimpanzee", "mouse", "fruitfly" or "arabidopsis".

Value

A named vector of convex weights.

Author(s)

Panagiotis Moulos

Examples

wh <- get.weights("human")

[Package metaseqR version 1.26.0 Index]