exportMat {metagenomeSeq} | R Documentation |
This function allows the user to take a dataset of counts and output the dataset to the user's workspace as a tab-delimited file, etc.
exportMat(obj, log = TRUE, norm = TRUE, sep = "\t", file = "~/Desktop/matrix.tsv")
obj |
A MRexperiment object or count matrix. |
log |
Whether or not to log transform the counts - if MRexperiment object. |
norm |
Whether or not to normalize the counts - if MRexperiment object. |
sep |
Separator for writing out the count matrix. |
file |
Output file name. |
NA
data(lungData) dataDirectory <- system.file("extdata", package="metagenomeSeq") exportMat(lungData[,1:5],file=file.path(dataDirectory,"tmp.tsv")) head(read.csv(file=file.path(dataDirectory,"tmp.tsv"),sep="\t"))