collapseRepliCounts {manta} | R Documentation |
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collapseRepliCounts(x, pair=nv(levels(x$samples$group)[1:2] , c('ref','obs')))
x |
a MANTA object. |
pair |
the pairs indicating which columns to collapse |
a collapsed, two-column count table
DGEList, manta
cts <- matrix(data=rnbinom(28,2,.4), ncol=4, nrow=7) colnames(cts) <- apply(expand.grid(c('a','b'),1:2), 1, paste, collapse='_') x <- manta(cts, makeSampleDF(cts, group=rep(c('a','b'),2))) collapseRepliCounts(x, pair=c('a','b'))