compbiasTest {manta} | R Documentation |
.
compbiasTest(x, pair=nv(levels(x$samples$group)[1:2] , c('ref','obs')), meta.lev='phylum', meta.lev.lim=min(10,nrow(x$meta.sum[[meta.lev]])))
x |
a MANTA object. |
pair |
named vector of the pair of conditions of interest |
meta.lev |
which taxinomic level should this test be run at |
meta.lev.lim |
how many underlying taxinomic levels should the analysis be limited to |
A DGEList object.
DGEList, manta
manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta") load(manta.path) compbiasTest(x, meta.lev='genus_sp')