maplot.protein {isobar} | R Documentation |
Plots ratio-versus-intensity for a selected protein against a reference channel.
maplot.protein(x, relative.to, protein, noise.model = NULL, channels = NULL, xlim = NULL, ylim = NULL, identify = FALSE, add = FALSE, pchs = NULL, log="xy", legend.pos = "topright", names = NULL, legend.cex = 0.8, cols = pchs, ltys = 1, main = protein, xlab = NULL, ylab = NULL, type="ma", show.lm = FALSE, ...)
x |
IBSpectra object |
relative.to |
a character vector specifying reporter tag names. Either of length 1 or same length as channels. |
protein |
Protein group identifier. |
noise.model |
NoiseModel object. |
channels |
Reporter tag names. |
xlim |
See par. |
ylim |
See par. |
identify |
boolean. If |
add |
|
pchs |
a vector of the same length as |
log |
a character string which contains |
legend.pos |
see |
names |
a character string of the same length as |
legend.cex |
see |
cols |
a vector of the same length as |
ltys |
a vector of the same length as |
main |
a main title for the plot |
xlab |
a label for the x axis, defaults to a description of |
ylab |
a label for the y axis, defaults to a description of |
type |
type of plot |
... |
passed to |
show.lm |
show LM |
Florian P. Breitwieser