hyp_show {hypeR} | R Documentation |
Convert hyp object to an interactive datatable
hyp_show(hyp_obj, simple = FALSE, stylish = FALSE)
hyp_obj |
A hyp object |
simple |
Use true to only include essential dataframe columns |
stylish |
Use true to add a bootstrap styling theme to datatable |
A datatable object
gsets <- hyperdb_fetch(type="gsets", "KEGG_2019_Human") signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502", "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC", "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2") # Perform hyper enrichment hyp_obj <- hypeR(signature, gsets, bg=2522, fdr_cutoff=0.05) # Export hyp_show(hyp_obj)