rgsets {hypeR}R Documentation

Relational genesets

Description

Relational genesets

Usage

rgsets

Format

An object of class R6ClassGenerator of length 24.

Arguments

gsets

A list of genesets where list names refers to geneset labels and values are geneset members represented as a vector

nodes

A data frame of labeled nodes e.g.

label
G1 Geneset 1
G2 Geneset 2
G3 Geneset 3
edges

A data frame of directed edges

from to
G1 G2
G1 G3

Methods

print(rgsets) shows some information about the object data

rgsets$subset(labels) returns an rgsets object subsetted on geneset labels

See Also

pvector

Examples

testdat <- readRDS(file.path(system.file("extdata", package="hypeR"), "testdat.rds"))
rgsets <- rgsets$new(gsets=testdat$gsets,
                     nodes=testdat$nodes,
                     edges=testdat$edges)


[Package hypeR version 1.2.0 Index]