msigdb_download_all {hypeR}R Documentation

Download all gsets from msigdb for a species

Description

Download all gsets from msigdb for a species

Usage

msigdb_download_all(species = "Homo sapiens", output_dir = NULL)

Arguments

species

A species to determine gene symbols (refer to ?msigdbr::msigdbr for avilable species)

output_dir

A directory path where gene sets are downloaded instead of to the package location

Value

A list containing the output directory and version number of gene sets

Examples

msigdb_path <- msigdb_download_all("Homo sapiens")


[Package hypeR version 1.2.0 Index]