rgsets {hypeR} | R Documentation |
Relational genesets
rgsets
An object of class R6ClassGenerator
of length 24.
A list of genesets where list names refers to geneset labels and values are geneset members represented as a vector
A data frame of labeled nodes e.g.
label | ||
G1 | Geneset 1 | |
G2 | Geneset 2 | |
G3 | Geneset 3 | |
A data frame of directed edges
from | to | |
G1 | G2 | |
G1 | G3 | |
print(rgsets)
shows some information about the object data
rgsets$subset(labels)
returns an rgsets object subsetted
on geneset labels
pvector
testdat <- readRDS(file.path(system.file("extdata", package="hypeR"), "testdat.rds")) rgsets <- rgsets$new(gsets=testdat$gsets, nodes=testdat$nodes, edges=testdat$edges)