msigdb_fetch {hypeR}R Documentation

Fetch gsets from msigdb

Description

Fetch gsets from msigdb

Usage

msigdb_fetch(msigdb_path, symbol = c("C1", "C2.CGP", "C2.CP",
  "C2.CP.BIOCARTA", "C2.CP.KEGG", "C2.CP.REACTOME", "C3.MIR", "C3.TFT",
  "C4.CGN", "C4.CM", "C5.BP", "C5.CC", "C5.MF", "C6", "C7", "H"))

Arguments

msigdb_path

A list containing the gene set directory and version number of gene sets

symbol

A symbol corresponding to a msigdb gene set

Value

A list of gene sets

Examples

msigdb_path <- msigdb_download_all("Homo sapiens")
REACTOME <- msigdb_fetch(msigdb_path, "C2.CP.REACTOME")


[Package hypeR version 1.2.0 Index]