ReadGoldData {genotypeeval} | R Documentation |
User Constructor for class
ReadGoldData(genome, vcffilename, goldparams)
genome |
Genome build, GRCh37 or GRCh38 |
vcffilename |
path and filename of vcf file |
goldparams |
GoldDataParam object setting thresholds for evaluation |
Object of class GoldData
gparam <- GoldDataParam(percent.confirmed=0.792, percent.het.rare = 0.93) g1000fn <- system.file("ext-data", "example_gold_file.vcf", package="genotypeeval") g1000 <- ReadGoldData("GRCh38", g1000fn, gparam)