getName {genotypeeval}R Documentation

Getter for VCFQAReport class to return filename slot

Description

Getter for VCFQAReport class to return filename slot

Usage

getName(Object)

Arguments

Object

Object of class VCFQAReport

Value

Name of file

Examples

vcffn <- system.file("ext-data", "chr22.GRCh38.vcf.gz", package="genotypeeval")
mydir <- paste(dirname(vcffn), "/", sep="")
myfile <-basename(vcffn)
svp <- ScanVcfParam(which=GRanges("22", IRanges(0,200e5)), geno="GT")
vcfparams <- VCFQAParam(count.limits=c(3014580000, Inf), readdepth.target = 30)
vcf <- ReadVCFData(mydir, myfile, "GRCh38")
ev <- VCFEvaluate(vcf, vcfparams)
getName(ev)

[Package genotypeeval version 1.18.0 Index]