readEDS {fishpond}R Documentation

readEDS - a utility function for quickly reading in Alevin's EDS format

Description

readEDS - a utility function for quickly reading in Alevin's EDS format

Usage

readEDS(numOfGenes, numOfOriginalCells, countMatFilename)

Arguments

numOfGenes

number of genes

numOfOriginalCells

number of cells

countMatFilename

pointer to the EDS file, quants_mat.gz

Value

a genes x cells sparse matrix, of the class dgCMatrix


[Package fishpond version 1.2.0 Index]