computeInfRV {fishpond}R Documentation

Compute inferential relative variance (InfRV)

Description

InfRV is used the Swish publication for visualization. This function provides computation of the mean InfRV, a simple statistic that measures inferential uncertainty. Note that InfRV is not used in the swish statistical method at all, it is just for visualization. See function code for details.

Usage

computeInfRV(y, pc = 5, shift = 0.01)

Arguments

y

a SummarizedExperiment

pc

a pseudocount parameter for the denominator

shift

a final shift parameter

Value

a SummarizedExperiment with meanInfRV in the metadata columns


[Package fishpond version 1.2.0 Index]