plot.ExomeCopy {exomeCopy} | R Documentation |
Plots the predicted copy count segments of an ExomeCopy object
## S3 method for class 'ExomeCopy' plot(x, points = TRUE, cols = NULL, show.legend = TRUE, main = "exomeCopy predicted segments", xlab = "genomic position", ylab = "normalized read count", xlim = NULL, ylim = NULL, cex = 1, lwd = 4, ...)
x |
The ExomeCopy object. |
points |
Logical, whether normalized read counts should be drawn. |
cols |
A vector of the same length as b, specifying a color for each of the states of the HMM. |
show.legend |
Logical, whether a default legend should be shown. |
main |
main title |
xlab |
x axis label |
ylab |
y axis label |
xlim |
x limits |
ylim |
y limits |
cex |
size of the points (if plotted) |
lwd |
line width |
... |
Other arguments passed to plot() |
exomeCopy
ExomeCopy-class
copyCountSegments
example(exomeCopy) plot(fit)