getMeanNormalizedCountsSE {deltaCaptureC} | R Documentation |
Get the mean normalized counts for each treatment
getMeanNormalizedCountsSE(countsSE, byTreatment = "treatment")
countsSE |
A SummarizedExperiment containing an assay 'counts' and optionally an assay 'normalizedCounts' |
byTreatment |
= 'treatment' This gives the column of colData to use for taking averages |
This function takes a SummarizedExperiment. It looks for an assay called normalizedCounts. If this assay is missing, it creates it by normalizing using the size factors. By default, it takes the mean for each value of colData$treatment
A SummarizedExperiment giving mean normalized counts for each value of byTreatment
meanNormalizedCountSE = getMeanNormalizedCountsSE(miniSE)