plot.tfbslogo {cobindR}R Documentation

function to plot sequence logos based on hits of tools

Description

plot.tfbslogo produces a sequence logo based on all hits per position weight matrix. If a file path is specified in pdf.name, sequences logos will be written into the specified file.

Usage

## S4 method for signature 'cobindr'
plot.tfbslogo(x, pwms)

Arguments

x

Object

pwms

vector of names of position weight matrices used for searching the sequences. For each pwm a new sequence logo based on the hits is produced.

Author(s)

Robert Lehmann <r.lehmann@biologie.hu-berlin.de


[Package cobindR version 1.24.0 Index]