plot.pairdistance {cobindR} | R Documentation |
For a specified pair of PWMs the function creates histogram plot of distances between pairs of TFs as specified by pwm1 and pwm2
## S4 method for signature 'cobindr' plot.pairdistance(x, pwm1, pwm2, breaks=50, main=NA, xlab=NA, ylab=NA, background=FALSE)
x |
an object of the class "cobindr", which will hold all necessary information about the sequences and the hits. |
pwm1 |
name of the first PWM |
pwm2 |
name of the second PWM |
breaks |
number of breaks to separate the distance distribution into |
main |
figure title |
xlab |
label for the x-axis of the figure |
ylab |
label for the y-axis of the figure |
background |
flag allowing to plot foreground or background distance distribution |
Manuela Benary <manuela.benary@cms.hu-berlin.de>