find.pairs {cobindR} | R Documentation |
find.pairs creates a data frame with all pairs in all sequences within the given distance.
find.pairs(x, background_scan = FALSE, n.cpu = NA)
x |
an object of the class "cobindr", which will hold all necessary information about the sequences and the hits. |
background_scan |
logical flag, if background_scan = TRUE the pairs for the background sequences will be found. |
n.cpu |
number of CPUs to be used for parallelization. Default value is 'NA' in which case the number of available CPUs is checked and than used. |
runObj |
an object of the class "cobindr" including the pairs of transcription factor binding sites |
Yue-Hien Lee <>