write.pairs {cobindR}R Documentation

function to write output of findPairs into file

Description

Function writes the results of findPairs() as a tab-separated file. The file consists of 6 columns, namely

Usage

## S4 method for signature 'cobindr'
write.pairs(x, file = NULL, background = FALSE)

Arguments

x

an object of the class "cobindr", which holds all necessary information about the sequences and the predicted binding sites.

file

path to file. If filename is 'NULL' a filename is generated based on the name of the object of class "cobindr".

background

logical flag. If background is 'TRUE' the pairs found in the background sequences are used.

Author(s)

Stefan Kroeger <kroeger@informatik.hu-berlin.de>

See Also

write.bindingsites.table, write.bindingsites, write.sequences, write


[Package cobindR version 1.24.0 Index]