summarizeWindowBps {cn.farms} | R Documentation |
Combines neighbouring locations to windows
summarizeWindowBps(phInf, fixedBps = 10000, upperLimit = 6)
phInf |
The locations on the chromosomes. |
fixedBps |
Size of the window in basepairs. |
upperLimit |
Maximal number of neigbouring locations to combine. |
Indices for summarization
Djork-Arne Clevert okko@clevert.de and Andreas Mitterecker mitterecker@bioinf.jku.at
## create toy physical data sizeTmp <- 30 phInf <- data.frame( chrom = rep("15", sizeTmp), start = seq(from = 1, by = 300, length.out = sizeTmp), end = seq(from = 3600, by = 300, length.out = sizeTmp), man_fsetid = paste("SNP_A-", seq(sizeTmp)+1000, sep = "")) summarizeWindowBps(phInf)