prepareGSEApathways {cTRAP}R Documentation

Prepare GSEA pathways

Description

Prepare GSEA pathways

Usage

prepareGSEApathways(diffExprGenes, geneSize)

Arguments

diffExprGenes

Numeric: named vector of differentially expressed genes whose names are gene identifiers and respective values are a statistic that represents significance and magnitude of differentially expressed genes (e.g. t-statistics)

geneSize

Number: top and bottom number of differentially expressed genes for gene set enrichment (only used if method = gsea)

Value

List of top and bottom differentially expressed genes


[Package cTRAP version 1.4.0 Index]