prepareENCODEgeneExpression {cTRAP} | R Documentation |
Load an ENCODE gene expression data
prepareENCODEgeneExpression(samples)
samples |
List of loaded ENCODE samples |
Data frame containing gene read counts
convertENSEMBLtoGeneSymbols
Other functions related with using ENCODE expression data: downloadENCODEknockdownMetadata
,
loadENCODEsamples
,
performDifferentialExpression
if (interactive()) { # Load ENCODE metadata for a specific cell line and gene cellLine <- "HepG2" gene <- "EIF4G1" ENCODEmetadata <- loadENCODEknockdownMetadata(cellLine, gene) # Load samples based on filtered ENCODE metadata ENCODEsamples <- loadENCODEsamples(ENCODEmetadata)[[1]] prepareENCODEgeneExpression(ENCODEsamples) }