performGSEAagainstReference {cTRAP}R Documentation

Perform gene set enrichment (GSA) against data columns

Description

Perform gene set enrichment (GSA) against data columns

Usage

performGSEAagainstReference(diffExprGenes, reference, pathways)

Arguments

diffExprGenes

Numeric: named vector of differentially expressed genes whose names are gene identifiers and respective values are a statistic that represents significance and magnitude of differentially expressed genes (e.g. t-statistics)

pathways

List of gene sets to check.

Value

Data frame containing gene set enrichment analysis (GSEA) results per data column


[Package cTRAP version 1.4.0 Index]