oncoprint.cbio {TRONCO} | R Documentation |
export input for cbio visualization at http://www.cbioportal.org/public-portal/oncoprinter.jsp
oncoprint.cbio(x, file = "oncoprint-cbio.txt", hom.del = "Homozygous Loss", het.loss = "Heterozygous Loss", gain = "Low-level Gain", amp = "High-level Gain")
x |
A TRONCO compliant dataset. |
file |
name of the file where to save the output |
hom.del |
type of Homozygous Deletion |
het.loss |
type of Heterozygous Loss |
gain |
type of Gain |
amp |
type of Amplification |
A file containing instruction for the CBio visualization Tool
data(crc_gistic) gistic = import.GISTIC(crc_gistic) oncoprint.cbio(gistic)