as.selective.advantage.relations {TRONCO} | R Documentation |
Returns a dataframe with all the selective advantage relations in a
TRONCO model. Confidence is also shown - see as.confidence
. It is possible to
specify a subset of events or models if multiple reconstruction have
been performed.
as.selective.advantage.relations(x, events = as.events(x), models = names(x$model), type = "fit")
x |
A TRONCO model. |
events |
A subset of events as of |
models |
A subset of reconstructed models, all by default. |
type |
Either Prima Facie ('pf') or fit ('fit') probabilities, 'fit' by default. |
All the selective advantage relations in a TRONCO model
data(test_model) as.selective.advantage.relations(test_model) as.selective.advantage.relations(test_model, events=as.events(test_model)[5:15,]) as.selective.advantage.relations(test_model, events=as.events(test_model)[5:15,], type='pf')