findHits {TPP2D} | R Documentation |
Find hits according to FDR threshold
findHits(fdr_df, alpha)
fdr_df |
data frame obtained from computeFdr |
alpha |
significance threshold, default is set to 0.1 |
data frame of significant hits at FDR = alpha
data("simulated_cell_extract_df") temp_df <- simulated_cell_extract_df %>% filter(clustername %in% paste0("protein", 1:5)) %>% group_by(representative) %>% mutate(nObs = n()) %>% ungroup example_out <- fitAndEvalDataset(temp_df) example_null <- bootstrapNull(temp_df, B = 2/10) fdr_df <- computeFdr(example_out, example_null) findHits(fdr_df, 0.1)