annotateDataList {TPP2D} | R Documentation |
Annotate imported data list using a config table
annotateDataList(dataList, geneNameVar, configLong, intensityStr, fcStr)
dataList |
list of datasets from different MS runs corresponding to a 2D-TPP dataset |
geneNameVar |
character string of the column name that describes the gene name of a given protein in the raw data files |
configLong |
long formatted data frame of a corresponding config table |
intensityStr |
character string indicating which columns contain raw intensities measurements |
fcStr |
character string indicating which columns contain the actual
fold change values. Those column names containing the suffix |
data frame containing all data annotated by information supplied in the config table
data("config_tab") data("raw_dat_list") dataList <- import2dMain(configTable = config_tab, data = raw_dat_list, idVar = "protein_id", fcStr = "rel_fc_", addCol = "gene_name", naStrs = NA, intensityStr = "signal_sum_", nonZeroCols = "qusm", qualColName = "qupm") configLong <- configWide2Long(configWide = config_tab) annotateDataList(dataList = dataList, geneNameVar = "gene_name", configLong = configLong, intensityStr = "signal_sum_", fcStr = "rel_fc_")