.toVcfBreakendNotationAlt {StructuralVariantAnnotation}R Documentation

Converts to breakend notation

Description

Converts to breakend notation

Usage

.toVcfBreakendNotationAlt(gr, insSeq = gr$insSeq, ref = gr$REF)

Arguments

gr

GRanges object.

insSeq

insert sequence of the GRanges.

ref

reference sequence of the GRanges.

Value

breakendAlt or breakpointAlt depending on whether the variant is partnered.


[Package StructuralVariantAnnotation version 1.2.0 Index]