.toVcfBreakendNotationAlt {StructuralVariantAnnotation} | R Documentation |
Converts to breakend notation
.toVcfBreakendNotationAlt(gr, insSeq = gr$insSeq, ref = gr$REF)
gr |
GRanges object. |
insSeq |
insert sequence of the GRanges. |
ref |
reference sequence of the GRanges. |
breakendAlt or breakpointAlt depending on whether the variant is partnered.