breakpointGRangesToVCF {StructuralVariantAnnotation}R Documentation

Converts the given breakpoint GRanges object to VCF format in breakend notation.

Description

Converts the given breakpoint GRanges object to VCF format in breakend notation.

Usage

breakpointGRangesToVCF(gr, ...)

Arguments

gr

breakpoint GRanges object. Can contain both breakpoint and single breakend SV records.

...

For cbind and rbind a list of VCF objects. For all other methods ... are additional arguments passed to methods. See VCF class in VariantAnnotation for more details.

Value

A VCF object.


[Package StructuralVariantAnnotation version 1.2.0 Index]