plot_volcano {ReactomeGSA}R Documentation

plot_volcano

Description

Creates a volcano plot for the pathway analysis result. Every point represents one pathway, the x-axis the log fold-change and the y-axis the adjusted p-value (-log10).

Usage

plot_volcano(x, ...)

Arguments

x

ReactomeAnalysisResult. The analysis result to plot the volcano plot for.

...

Additional parameters for specific implementations.

Details

This function is only available for GSA-based analysis results.

Value

A ggplot2 plot object representing the volcano plot.

See Also

Other ReactomeAnalysisResult functions: get_result, names,ReactomeAnalysisResult-method, open_reactome, pathways, plot_correlations, reactome_links, result_types

Examples

# load an example result
library(ReactomeGSA.data)
data(griss_melanoma_result)

# create the volcano plot for the first dataset
plot_obj <- plot_volcano(griss_melanoma_result)

# display the plot using `print(plot_obj)`

[Package ReactomeGSA version 1.0.0 Index]