plot_volcano {ReactomeGSA} | R Documentation |
Creates a volcano plot for the pathway analysis result. Every point represents one pathway, the x-axis the log fold-change and the y-axis the adjusted p-value (-log10).
plot_volcano(x, ...)
x |
ReactomeAnalysisResult. The analysis result to plot the volcano plot for. |
... |
Additional parameters for specific implementations. |
This function is only available for GSA-based analysis results.
A ggplot2 plot object representing the volcano plot.
Other ReactomeAnalysisResult functions: get_result
,
names,ReactomeAnalysisResult-method
,
open_reactome
, pathways
,
plot_correlations
,
reactome_links
, result_types
# load an example result library(ReactomeGSA.data) data(griss_melanoma_result) # create the volcano plot for the first dataset plot_obj <- plot_volcano(griss_melanoma_result) # display the plot using `print(plot_obj)`