getQAStats {QUALIFIER} | R Documentation |
getQAStats
calculates and extract statistics of each
gated cell population in the gating hierarchies generated by flowWorkspace
package.
getQAStats(obj, ...)
obj |
A |
... |
other arguments isFlowCore: A isMFI a isSpike a isRaw pops a isChannel a nslaves: An |
This is the second preprocessing step followed by parsing gating template
from flowJo workspace with flowjo_to_gatingset
. Different QA checks
can be performed after this step is done. when obj is an environment
the results are stored as a dataframe with the name of "statsOfGS" in the
environment.
a data frame when obj is a GatingHierarchy
or GatingSet
Mike Jiang,Greg Finak
Maintainer: Mike Jiang <wjiang2@fhcrc.org>
## Not run: getQAStats(G[[1]])#extract stats from a gating hierarchy getQAStats(G[[1]], isMFI = TRUE, pops = c("/boundary/lymph/CD3/CD4"))#extract stats from a gating hierarchy getQAStats(G)#from a gating set ## End(Not run)